| No | Hotel | Rooms | Score | |
|---|---|---|---|---|
| 1 |  |
Best Western Kelly Inn - Yankton | 59 | 7.20 |
| 2 | |
Comfort Inn Yankton SD | 54 | 8.40 |
| 3 | |
Econo Lodge Inn & Suites | 46 | 7.00 |
| 4 | |
Holiday Inn Express & Suites Yankton by IHG | 2 | 8.80 |